XmlmmCIF equivalent: atom_sites
Data items in the ATOM_SITES category record details about
the crystallographic cell and cell transformations, which are
common to all atom sites.
XmlmmCIF equivalent: atom_sites/Cartn_transf_matrix11
The [1][1] element of the 3x3 matrix used to transform
fractional coordinates in the ATOM_SITE category to Cartesian
coordinates in the same category. The axial alignments of this
transformation are described in _atom_sites.Cartn_transform_axes.
The 3x1 translation is defined in
_atom_sites.Cartn_transf_vector[].
|x'| |11 12 13| |x| |1|
|y'|~Cartesian~ = |21 22 23| |y|~fractional~ + |2|
|z'| |31 32 33| |z| |3|
XmlmmCIF equivalent: atom_sites/Cartn_transf_matrix12
The [1][2] element of the 3x3 matrix used to transform
fractional coordinates in the ATOM_SITE category to Cartesian
coordinates in the same category. The axial alignments of this
transformation are described in _atom_sites.Cartn_transform_axes.
The 3x1 translation is defined in
_atom_sites.Cartn_transf_vector[].
|x'| |11 12 13| |x| |1|
|y'|~Cartesian~ = |21 22 23| |y|~fractional~ + |2|
|z'| |31 32 33| |z| |3|
XmlmmCIF equivalent: atom_sites/Cartn_transf_matrix13
The [1][3] element of the 3x3 matrix used to transform
fractional coordinates in the ATOM_SITE category to Cartesian
coordinates in the same category. The axial alignments of this
transformation are described in _atom_sites.Cartn_transform_axes.
The 3x1 translation is defined in
_atom_sites.Cartn_transf_vector[].
|x'| |11 12 13| |x| |1|
|y'|~Cartesian~ = |21 22 23| |y|~fractional~ + |2|
|z'| |31 32 33| |z| |3|
XmlmmCIF equivalent: atom_sites/Cartn_transf_matrix21
The [2][1] element of the 3x3 matrix used to transform
fractional coordinates in the ATOM_SITE category to Cartesian
coordinates in the same category. The axial alignments of this
transformation are described in _atom_sites.Cartn_transform_axes.
The 3x1 translation is defined in
_atom_sites.Cartn_transf_vector[].
|x'| |11 12 13| |x| |1|
|y'|~Cartesian~ = |21 22 23| |y|~fractional~ + |2|
|z'| |31 32 33| |z| |3|
XmlmmCIF equivalent: atom_sites/Cartn_transf_matrix22
The [2][2] element of the 3x3 matrix used to transform
fractional coordinates in the ATOM_SITE category to Cartesian
coordinates in the same category. The axial alignments of this
transformation are described in _atom_sites.Cartn_transform_axes.
The 3x1 translation is defined in
_atom_sites.Cartn_transf_vector[].
|x'| |11 12 13| |x| |1|
|y'|~Cartesian~ = |21 22 23| |y|~fractional~ + |2|
|z'| |31 32 33| |z| |3|
XmlmmCIF equivalent: atom_sites/Cartn_transf_matrix23
The [2][3] element of the 3x3 matrix used to transform
fractional coordinates in the ATOM_SITE category to Cartesian
coordinates in the same category. The axial alignments of this
transformation are described in _atom_sites.Cartn_transform_axes.
The 3x1 translation is defined in
_atom_sites.Cartn_transf_vector[].
|x'| |11 12 13| |x| |1|
|y'|~Cartesian~ = |21 22 23| |y|~fractional~ + |2|
|z'| |31 32 33| |z| |3|
XmlmmCIF equivalent: atom_sites/Cartn_transf_matrix31
The [3][1] element of the 3x3 matrix used to transform
fractional coordinates in the ATOM_SITE category to Cartesian
coordinates in the same category. The axial alignments of this
transformation are described in _atom_sites.Cartn_transform_axes.
The 3x1 translation is defined in
_atom_sites.Cartn_transf_vector[].
|x'| |11 12 13| |x| |1|
|y'|~Cartesian~ = |21 22 23| |y|~fractional~ + |2|
|z'| |31 32 33| |z| |3|
XmlmmCIF equivalent: atom_sites/Cartn_transf_matrix32
The [3][2] element of the 3x3 matrix used to transform
fractional coordinates in the ATOM_SITE category to Cartesian
coordinates in the same category. The axial alignments of this
transformation are described in _atom_sites.Cartn_transform_axes.
The 3x1 translation is defined in
_atom_sites.Cartn_transf_vector[].
|x'| |11 12 13| |x| |1|
|y'|~Cartesian~ = |21 22 23| |y|~fractional~ + |2|
|z'| |31 32 33| |z| |3|
XmlmmCIF equivalent: atom_sites/Cartn_transf_matrix33
The [3][3] element of the 3x3 matrix used to transform
fractional coordinates in the ATOM_SITE category to Cartesian
coordinates in the same category. The axial alignments of this
transformation are described in _atom_sites.Cartn_transform_axes.
The 3x1 translation is defined in
_atom_sites.Cartn_transf_vector[].
|x'| |11 12 13| |x| |1|
|y'|~Cartesian~ = |21 22 23| |y|~fractional~ + |2|
|z'| |31 32 33| |z| |3|
XmlmmCIF equivalent: atom_sites/Cartn_transf_vector1
The [1] element of the 3 element vector used to transform
fractional coordinates in the ATOM_SITE category to Cartesian
coordinates in the same category. The axial alignments of this
transformation are described in _atom_sites.Cartn_transform_axes.
The rotation matrix is defined in
_atom_sites.Cartn_transf_matrix[][].
|x'| |11 12 13| |x| |1|
|y'|~Cartesian~ = |21 22 23| |y|~fractional~ + |2|
|z'| |31 32 33| |z| |3|
XmlmmCIF equivalent: atom_sites/Cartn_transf_vector2
The [2] element of the 3 element vector used to transform
fractional coordinates in the ATOM_SITE category to Cartesian
coordinates in the same category. The axial alignments of this
transformation are described in _atom_sites.Cartn_transform_axes.
The rotation matrix is defined in
_atom_sites.Cartn_transf_matrix[][].
|x'| |11 12 13| |x| |1|
|y'|~Cartesian~ = |21 22 23| |y|~fractional~ + |2|
|z'| |31 32 33| |z| |3|
XmlmmCIF equivalent: atom_sites/Cartn_transf_vector3
The [3] element of the 3 element vector used to transform
fractional coordinates in the ATOM_SITE category to Cartesian
coordinates in the same category. The axial alignments of this
transformation are described in _atom_sites.Cartn_transform_axes.
The rotation matrix is defined in
_atom_sites.Cartn_transf_matrix[][].
|x'| |11 12 13| |x| |1|
|y'|~Cartesian~ = |21 22 23| |y|~fractional~ + |2|
|z'| |31 32 33| |z| |3|
XmlmmCIF equivalent: atom_sites/Cartn_transform_axes
A description of the relative alignment of the crystal cell
axes to the Cartesian orthogonal axes as applied in the
transformation matrix _atom_sites.Cartn_transf_matrix.
XmlmmCIF equivalent: atom_sites/fract_transf_matrix11
The [1][1] element of the 3x3 matrix used to transform Cartesian
coordinates in the ATOM_SITE category to fractional coordinates
in the same category. The axial alignments of this
transformation are described in _atom_sites.Cartn_transform_axes.
The 3x1 translation is defined in
_atom_sites.fract_transf_vector[].
|x'| |11 12 13| |x| |1|
|y'|~fractional~ = |21 22 23| |y|~Cartesian~ + |2|
|z'| |31 32 33| |z| |3|
XmlmmCIF equivalent: atom_sites/fract_transf_matrix12
The [1][2] element of the 3x3 matrix used to transform Cartesian
coordinates in the ATOM_SITE category to fractional coordinates
in the same category. The axial alignments of this
transformation are described in _atom_sites.Cartn_transform_axes.
The 3x1 translation is defined in
_atom_sites.fract_transf_vector[].
|x'| |11 12 13| |x| |1|
|y'|~fractional~ = |21 22 23| |y|~Cartesian~ + |2|
|z'| |31 32 33| |z| |3|
XmlmmCIF equivalent: atom_sites/fract_transf_matrix13
The [1][3] element of the 3x3 matrix used to transform Cartesian
coordinates in the ATOM_SITE category to fractional coordinates
in the same category. The axial alignments of this
transformation are described in _atom_sites.Cartn_transform_axes.
The 3x1 translation is defined in
_atom_sites.fract_transf_vector[].
|x'| |11 12 13| |x| |1|
|y'|~fractional~ = |21 22 23| |y|~Cartesian~ + |2|
|z'| |31 32 33| |z| |3|
XmlmmCIF equivalent: atom_sites/fract_transf_matrix21
The [2][1] element of the 3x3 matrix used to transform Cartesian
coordinates in the ATOM_SITE category to fractional coordinates
in the same category. The axial alignments of this
transformation are described in _atom_sites.Cartn_transform_axes.
The 3x1 translation is defined in
_atom_sites.fract_transf_vector[].
|x'| |11 12 13| |x| |1|
|y'|~fractional~ = |21 22 23| |y|~Cartesian~ + |2|
|z'| |31 32 33| |z| |3|
XmlmmCIF equivalent: atom_sites/fract_transf_matrix22
The [2][3] element of the 3x3 matrix used to transform Cartesian
coordinates in the ATOM_SITE category to fractional coordinates
in the same category. The axial alignments of this
transformation are described in _atom_sites.Cartn_transform_axes.
The 3x1 translation is defined in
_atom_sites.fract_transf_vector[].
|x'| |11 12 13| |x| |1|
|y'|~fractional~ = |21 22 23| |y|~Cartesian~ + |2|
|z'| |31 32 33| |z| |3|
XmlmmCIF equivalent: atom_sites/fract_transf_matrix23
The [2][3] element of the 3x3 matrix used to transform Cartesian
coordinates in the ATOM_SITE category to fractional coordinates
in the same category. The axial alignments of this
transformation are described in _atom_sites.Cartn_transform_axes.
The 3x1 translation is defined in
_atom_sites.fract_transf_vector[].
|x'| |11 12 13| |x| |1|
|y'|~fractional~ = |21 22 23| |y|~Cartesian~ + |2|
|z'| |31 32 33| |z| |3|
XmlmmCIF equivalent: atom_sites/fract_transf_matrix31
The [3][1] element of the 3x3 matrix used to transform Cartesian
coordinates in the ATOM_SITE category to fractional coordinates
in the same category. The axial alignments of this
transformation are described in _atom_sites.Cartn_transform_axes.
The 3x1 translation is defined in
_atom_sites.fract_transf_vector[].
|x'| |11 12 13| |x| |1|
|y'|~fractional~ = |21 22 23| |y|~Cartesian~ + |2|
|z'| |31 32 33| |z| |3|
XmlmmCIF equivalent: atom_sites/fract_transf_matrix32
The [3][2] element of the 3x3 matrix used to transform Cartesian
coordinates in the ATOM_SITE category to fractional coordinates
in the same category. The axial alignments of this
transformation are described in _atom_sites.Cartn_transform_axes.
The 3x1 translation is defined in
_atom_sites.fract_transf_vector[].
|x'| |11 12 13| |x| |1|
|y'|~fractional~ = |21 22 23| |y|~Cartesian~ + |2|
|z'| |31 32 33| |z| |3|
XmlmmCIF equivalent: atom_sites/fract_transf_matrix33
The [3][3] element of the 3x3 matrix used to transform Cartesian
coordinates in the ATOM_SITE category to fractional coordinates
in the same category. The axial alignments of this
transformation are described in _atom_sites.Cartn_transform_axes.
The 3x1 translation is defined in
_atom_sites.fract_transf_vector[].
|x'| |11 12 13| |x| |1|
|y'|~fractional~ = |21 22 23| |y|~Cartesian~ + |2|
|z'| |31 32 33| |z| |3|
XmlmmCIF equivalent: atom_sites/fract_transf_vector1
The [1] element of the 3 element vector used to transform
Cartesian coordinates in the ATOM_SITE category to fractional
coordinates in the same category. The axial alignments of this
transformation are described in _atom_sites.Cartn_transform_axes.
The 3x3 rotation is defined in
_atom_sites.fract_transf_matrix[][].
|x'| |11 12 13| |x| |1|
|y'|~fractional~ = |21 22 23| |y|~Cartesian~ + |2|
|z'| |31 32 33| |z| |3|
XmlmmCIF equivalent: atom_sites/fract_transf_vector2
The [2] element of the 3 element vector used to transform
Cartesian coordinates in the ATOM_SITE category to fractional
coordinates in the same category. The axial alignments of this
transformation are described in _atom_sites.Cartn_transform_axes.
The 3x3 rotation is defined in
_atom_sites.fract_transf_matrix[][].
|x'| |11 12 13| |x| |1|
|y'|~fractional~ = |21 22 23| |y|~Cartesian~ + |2|
|z'| |31 32 33| |z| |3|
XmlmmCIF equivalent: atom_sites/fract_transf_vector3
The [3] element of the 3 element vector used to transform
Cartesian coordinates in the ATOM_SITE category to fractional
coordinates in the same category. The axial alignments of this
transformation are described in _atom_sites.Cartn_transform_axes.
The 3x3 rotation is defined in
_atom_sites.fract_transf_matrix[][].
|x'| |11 12 13| |x| |1|
|y'|~fractional~ = |21 22 23| |y|~Cartesian~ + |2|
|z'| |31 32 33| |z| |3|
XmlmmCIF equivalent: atom_sites/solution_hydrogens
A code which identifies the methods used to locate the initial
atomic sites. The solution_hydrogens code identifies how the
hydrogens were located.
*** This data item would not in general be used in a
macromolecular data block. ***
XmlmmCIF equivalent: atom_sites/solution_primary
A code which identifies the methods used to locate the initial
atomic sites. The solution_primary code identifies how the first
atom sites were determined.
*** This data item would not in general be used in a
macromolecular data block. ***
XmlmmCIF equivalent: atom_sites/solution_secondary
A code which identifies the methods used to locate the initial
atomic sites. The solution_secondary code identifies
how the non-hydrogen sites not include in solution_primary
were located.
*** This data item would not in general be used in a
macromolecular data block. ***
XmlmmCIF equivalent: atom_sites/entry_id
This data item is a pointer to _entry.id in the ENTRY category.